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1

Specifications of the ACMG/AMP standards and guidelines for mitochondrial DNA variant interpretation

McCormick, Elizabeth M., Lott, Marie T., Dulik, Matthew C., Shen, Lishuang, Attimonelli, Marcella, Vitale, Ornella, Karaa, Amel, Bai, Renkui, Pineda-Alvarez, Daniel E., Singh, Larry N., Stanley, Chris

Journal:

Year:

2020

File:

PDF, 716 KB

2020

2

Genetic analysis of mitochondrial DNA control region variations in four tribes of Khyber Pakhtunkhwa, Pakistan

Bhatti, Shahzad, Aslamkhan, M., Abbas, Sana, Attimonelli, Marcella, Aydin, Hikmet Hakan, de Souza, Erica Martinha Silva

Journal:

Mitochondrial DNA Part A

Year:

2016

Language:

english

File:

PDF, 1.34 MB

english, 2016

3

Phylogeography and conservation perspectives of an endangered macaronesian endemic:Picconia azorica(Tutin) Knobl. (Oleaceae)

Raquel C. Ferreira, Roberta Piredda, Francesca Bagnoli, Rosanna Bellarosa, Marcella Attimonelli, Silvia Fineschi, Bartolomeo Schirone, Marco C. Simeone

Journal:

European Journal of Forest Research

Year:

2011

Language:

english

File:

PDF, 425 KB

english, 2011

4

Linguistic approaches to the analysis of sequence information

Graziano Pesole, Marcella Attimonelli, Cecilia Saccone

Journal:

Trends in Biotechnology

Year:

1994

Language:

english

File:

PDF, 728 KB

english, 1994

5

Human mtDNA site-specific variability values can act as haplogroup markers

Matteo Accetturo, Monica Santamaria, Daniela Lascaro, Francesco Rubino, Alessandro Achilli, Antonio Torroni, Mila Tommaseo-Ponzetta, Marcella Attimonelli

Journal:

Year:

2006

Language:

english

File:

PDF, 228 KB

english, 2006

6

The reference human nuclear mitochondrial sequences compilation validated and implemented on the UCSC genome browser

Domenico Simone, Francesco Maria Calabrese, Martin Lang, Giuseppe Gasparre, Marcella Attimonelli

Journal:

Year:

2011

Language:

english

File:

PDF, 1.26 MB

english, 2011

7

Late-onset Leber hereditary optic neuropathy mimicking Susac’s syndrome

Stefano Zoccolella, Vittoria Petruzzella, Francesco Prascina, Lucia Artuso, Francesca Pacillo, Rosa Dell’Aglio, Carlo Avolio, Nicola Delle Noci, Marcella Attimonelli, Luigi Maria Specchio

Journal:

Journal of Neurology

Year:

2010

Language:

english

File:

PDF, 263 KB

english, 2010

8

Sequence software

SACCONE, CECILIA, LANAVE, CECILIA, ATTIMONELLI, MARCELLA, SIMPSON, GIULIA

Journal:

Year:

1982

File:

PDF, 144 KB

1982

9

Multisequence comparisons in protein coding genes

Marcella Attimonelli, Cecilia Lanave, Elisabetta Sbisa, Giuliano Preparata, Cecilia Saccone

Journal:

Cell Biochemistry and Biophysics

Year:

1985

Language:

english

File:

PDF, 922 KB

english, 1985

10

Polymorphic NumtS trace human population relationships

Martin Lang, Marco Sazzini, Francesco Maria Calabrese, Domenico Simone, Alessio Boattini, Giovanni Romeo, Donata Luiselli, Marcella Attimonelli, Giuseppe Gasparre

Journal:

Year:

2012

Language:

english

File:

PDF, 595 KB

english, 2012

11

Searching for a needle in the haystack: Comparing six methods to evaluate heteroplasmy in difficult sequence context

Ivana Kurelac, Martin Lang, Roberta Zuntini, Claudia Calabrese, Domenico Simone, Saverio Vicario, Monica Santamaria, Marcella Attimonelli, Giovanni Romeo, Giuseppe Gasparre

Journal:

Biotechnology Advances

Year:

2012

Language:

english

File:

PDF, 1.00 MB

english, 2012

12

RegExpBlasting (REB), a Regular Expression Blasting algorithm based on multiply aligned sequences

Francesco Rubino, Marcella Attimonelli

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 632 KB

english, 2009

13

HmtDB, a Human Mitochondrial Genomic Resource Based on Variability Studies Supporting Population Genetics and Biomedical Research

Marcella Attimonelli, Matteo Accetturo, Monica Santamaria, Daniela Lascaro, Gaetano Scioscia, Graziano Pappadà, Luigi Russo, Luigi Zanchetta, Mila Tommaseo-Ponzetta

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 1.65 MB

english, 2005

14

The RHNumtS compilation: Features and bioinformatics approaches to locate and quantify Human NumtS

Daniela Lascaro, Stefano Castellana, Giuseppe Gasparre, Giovanni Romeo, Cecilia Saccone, Marcella Attimonelli

Journal:

Year:

2008

Language:

english

File:

PDF, 813 KB

english, 2008

15

Prospects of barcoding the Italian wild dendroflora: oaks reveal severe limitations to tracking species identity

ROBERTA PIREDDA, MARCO C. SIMEONE, MARCELLA ATTIMONELLI, ROSANNA BELLAROSA, BARTOLOMEO SCHIRONE

Journal:

Molecular Ecology Resources

Year:

2011

Language:

english

File:

PDF, 315 KB

english, 2011

16

Primates and mouse NumtS in the UCSC Genome Browser

Francesco Maria Calabrese, Domenico Simone, Marcella Attimonelli

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 1.18 MB

english, 2012

17

WORDUP: an efficient algorithm for discovering statistically significant patterns in DNA sequences

Pesole, Graziano, Prunella, Nicola, Liuni, Sabino, Attimonelli, Marcella, Saccone, Cecilia

Journal:

Nucleic Acids Research

Year:

1992

Language:

english

File:

PDF, 422 KB

english, 1992

18

Extraction and annotation of human mitochondrial genomes from 1000 Genomes Whole Exome Sequencing data

Diroma, Maria Angela, Calabrese, Claudia, Simone, Domenico, Santorsola, Mariangela, Calabrese, Francesco Maria, Gasparre, Giuseppe, Attimonelli, Marcella

Journal:

Year:

2014

Language:

english

File:

PDF, 1.02 MB

english, 2014

19

[IEEE Sixth IEEE International Conference on Data Mining - Workshops (ICDMW'06) - Hong Kong, China (2006.12.18-2006.12.22)] Sixth IEEE International Conference on Data Mining - Workshops (ICDMW'06) - Mining Information Extraction Models for HmtDB annotation

Berardi, Margherita, Malerba, Donato, Attimonelli, Marcella

Year:

2006

Language:

english

File:

PDF, 123 KB

english, 2006

20

A simple method for global sequence comparison

Pizzi, Elisabetta, Attimonelli, Marcella, Liuni, Sabino, Frontali, Clara, Saccone, Cecilia

Journal:

Nucleic Acids Research

Year:

1992

Language:

english

File:

PDF, 694 KB

english, 1992

21

A backtranslation method based on codon usage strategy

Pesole, Graziano, Attimonelli, Marcella, Liuni, Sabino

Journal:

Nucleic Acids Research

Year:

1988

Language:

english

File:

PDF, 481 KB

english, 1988

22

CLEANUP: a fast computer program for removing redundancies from nucleotide sequence databases

Grillo, Giorgio, Attimonelli, Marcella, Liuni, Sabino, Pesole, Graziano

Journal:

Year:

1996

Language:

english

File:

PDF, 1.33 MB

english, 1996

23

FASTPAT: a fast and efficient algorithm for string searching in DNA sequences

Nicola, Prunella, Liuni, Sabino, Attimonelli, Marcella, Pasole, Graziano

Journal:

Year:

1993

Language:

english

File:

PDF, 449 KB

english, 1993

24

A multi-parametric workflow for the prioritization of mitochondrial DNA variants of clinical interest

Santorsola, Mariangela, Calabrese, Claudia, Girolimetti, Giulia, Diroma, Maria Angela, Gasparre, Giuseppe, Attimonelli, Marcella

Journal:

Year:

2016

Language:

english

File:

PDF, 753 KB

english, 2016

25

Mitochondrial DNA variation in the Sindh population of Pakistan

Bhatti, Shahzad, Aslamkhan, Muhammad, Attimonelli, Marcella, Abbas, Sana, Aydin, Hikmet Hakan

Journal:

Australian Journal of Forensic Sciences

Year:

2016

Language:

english

File:

PDF, 924 KB

english, 2016

26

The Role of cheA Genes in Swarming and Swimming Motility of Pseudomonas pseudoalcaligenes KF707

Fedi, Stefano, Barberi, Tania Triscari, Nappi, Maria Rosaria, Sandri, Federica, Booth, Sean, Turner, Raymond J., Attimonelli, Marcella, Cappelletti, Martina, Zannoni, Davide

Year:

2016

Language:

english

File:

PDF, 568 KB

english, 2016

27

A comprehensive collection of annotations to interpret sequence variation in human mitochondrial transfer RNAs

Diroma, Maria Angela, Lubisco, Paolo, Attimonelli, Marcella

Journal:

BMC Bioinformatics

Year:

2016

Language:

english

File:

PDF, 1.19 MB

english, 2016

28

Problems in Mitochondrial DNA forensics: while interpreting length heteroplasmy conundrum of various Sindhi and Baluchi ethnic groups of Pakistan

Bhatti, Shahzad, Aslam Khan, Muhammad, Abbas, Sana, Attimonelli, Marcella, Gonzalez, Gerardo Rodriguez, Aydin, Hikmet Hakan, de Souza, Erica Martinha Silva

Journal:

Mitochondrial DNA Part A

Year:

2017

Language:

english

File:

PDF, 1.30 MB

english, 2017

29

Genetic perspective of uniparental mitochondrial DNA landscape on the Punjabi population, Pakistan

Bhatti, Shahzad, Abbas, Sana, Aslamkhan, Muhammad, Attimonelli, Marcella, Trinidad, Magali Segundo, Aydin, Hikmet Hakan, de Souza, Erica Martinha Silva, Gonzalez, Gerardo Rodriguez

Journal:

Mitochondrial DNA Part A

Year:

2017

Language:

english

File:

PDF, 1.56 MB

english, 2017

30

HmtDB 2016: data update, a better performing query system and human mitochondrial DNA haplogroup predictor

Clima, Rosanna, Preste, Roberto, Calabrese, Claudia, Diroma, Maria Angela, Santorsola, Mariangela, Scioscia, Gaetano, Simone, Domenico, Shen, Lishuang, Gasparre, Giuseppe, Attimonelli, Marcella

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 3.40 MB

english, 2017

31

MSeqDR mvTool: A mitochondrial DNA web and API resource for comprehensive variant annotation, universal nomenclature collation, and reference genome conversion

Shen, Lishuang, Attimonelli, Marcella, Bai, Renkui, Lott, Marie T., Wallace, Douglas C., Falk, Marni J., Gai, Xiaowu

Journal:

Year:

2018

Language:

english

File:

PDF, 671 KB

english, 2018

32

PPNEMA: A Resource of Plant-Parasitic Nematodes Multialigned Ribosomal Cistrons

Rubino, Francesco, Voukelatou, Amalia, De Luca, Francesca, De Giorgi, Carla, Attimonelli, Marcella

Journal:

International Journal of Plant Genomics

Year:

2008

Language:

english

File:

PDF, 4.19 MB

english, 2008

33

Compositional bias and mimicry toward the nonself proteome in immunodominant T cell epitopes of self and nonself antigens

RISTORI, GIOVANNI, SALVETTI, MARCO, PESOLE, GRAZIANO, ATTIMONELLI, MARCELLA, BUTTINELLI, CARLA, MARTIN, ROLAND, RICCIO, PAOLO

Journal:

The FASEB Journal

Year:

2000

Language:

english

File:

PDF, 257 KB

english, 2000

34

HmtVar: a new resource for human mitochondrial variations and pathogenicity data

Preste, Roberto, Vitale, Ornella, Clima, Rosanna, Gasparre, Giuseppe, Attimonelli, Marcella

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 1.02 MB

english, 2018

35

A data and text mining pipeline to annotate human mitochondrial variants with functional and clinical information

Vitale, Ornella, Preste, Roberto, Palmisano, Donato, Attimonelli, Marcella

Journal:

Molecular Genetics & Genomic Medicine

Year:

2019

File:

PDF, 729 KB

2019

36

Investigating Human Mitochondrial Genomes in Single Cells

Diroma, Maria Angela, Varvara, Angelo Sante, Attimonelli, Marcella, Pesole, Graziano, Picardi, Ernesto

Journal:

Year:

2020

File:

PDF, 534 KB

2020

37

Decreased mitochondrial DNA content drives OXPHOS dysregulation in chromophobe renal cell carcinoma

Xiao, Yi, Clima, Rosanna, Busch, Jonas, Rabien, Anja, Kilic, Ergin, Villegas, Sonia L., Timmermann, Bernd, Attimonelli, Marcella, Jung, Klaus, Meierhofer, David

Journal:

Cancer Research

Year:

2020

File:

PDF, 3.21 MB

2020

38

The Human Mitochondrial Genome || Bioinformatics resources, databases, and tools for human mtDNA

Attimonelli, Marcella

Year:

2020

File:

PDF, 1.50 MB

2020

39

The Human Mitochondrial Genome || Human nuclear mitochondrial sequences (NumtS)

Attimonelli, Marcella

Year:

2020

File:

PDF, 1.99 MB

2020